.. _related:

Related Projects
================


NeuPrint on github
------------------

The `NeuPrint <https://github.com/connectome-neuprint>`_ organization on github is home to several
repositories, including `neuprint-python <https://github.com/connectome-neuprint/neuprint-python>`_.

- `CBLAST <https://github.com/connectome-neuprint/CBLAST>`_ clusters neurons by cell type according to their common connectivity.
- `neuVid <https://github.com/connectome-neuprint/neuVid>`_ is a collection of scripts to generate animations of neuron meshes using Blender.
- `react-skeleton <https://github.com/connectome-neuprint/react-skeleton>`_ is a ``React`` component to display
  neurons skeletons in 3D using `SharkViewer <https://github.com/JaneliaSciComp/SharkViewer>`_.


Clio
----

The `Clio <https://clio.janelia.org>`_ project provides tools for creating your own annotations on
public EM datasets, and sharing those annotations with others if you choose to.
There's also a fun image search tool for finding interesting features in the raw EM data.
Additionally, use Clio to make lightweight corrections to the segmentation for your own viewing,
and submit those changes to be included in the public version of the segmentation, too.


DVID
----

`DVID <https://dvid.io>`_ provides a versioned storage service for image volumes.
It serves as the primary storage engine for FlyEM's reconstruction efforts.


neuprintr
---------

`neuprintr <http://natverse.org/neuprintr/>`_ provides R users with access to neuprint.


NAVis
-----

`NAVis <https://navis.readthedocs.io/en/latest/index.html>`_ supports manipulation
and visualization of neuron morphologies.  A tutorial on using NAVis with
``neuprint-python`` can be found `here <https://navis.readthedocs.io/en/latest/source/tutorials/neuprint.html>`_.